MIRRI/mirri_utils
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Bugfix #1

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avara merged 3 commits from dev into master 2022-05-19 10:21:25 +00:00
Conversation 1 Commits 3 Files Changed 2 +6 -1
2 changed files with 6 additions and 1 deletions
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5
mirri/validation/error_logging/error_message.py
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@ -355,6 +355,11 @@ class ErrorMessage():
msg += "If the those values are Pubmed ids or DOIs, please ignore this messsage" msg += "If the those values are Pubmed ids or DOIs, please ignore this messsage"
return msg return msg
def STD46(self):
msg = f"If date of collection/isolation/deposit/inclusion in the catalog is after 2014," \
f" the value of Geographic Origin must be provided. It is missing for strain {self.pk}."
return msg
""" """
Genomic Information Error Codes Genomic Information Error Codes

2
mirri/validation/validation_conf_20200601.py
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@ -405,7 +405,7 @@ SHEETS_SCHEMA = {
'id_field': 'Accession number', 'id_field': 'Accession number',
VALIDATION: {TYPE: MANDATORY, ERROR_CODE: "EFS05"}, VALIDATION: {TYPE: MANDATORY, ERROR_CODE: "EFS05"},
ROW_VALIDATION: [ ROW_VALIDATION: [
{TYPE: NAGOYA, ERROR_CODE: "STRXXX"}, {TYPE: NAGOYA, ERROR_CODE: "STD46"},
], ],
COLUMNS: STRAIN_FIELDS, COLUMNS: STRAIN_FIELDS,
}, },