forked from MIRRI/mirri_utils
65 lines
2.0 KiB
Python
65 lines
2.0 KiB
Python
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from mirri.entities.strain import Taxonomy
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#TODO this is all wrong, needs deep revision
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class TaxonomyMirri(Taxonomy):
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def __init__(self, **kwargs):
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super().__init__(freeze=False, **kwargs)
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fields = ['record_id', 'record_name', 'acronym', 'full_description',
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'ingredients', 'description', 'other_name', 'ph',
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'sterilization_conditions']
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def __init__(self, **kwargs):
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self._data = {}
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for field in self.fields:
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if field in kwargs and kwargs['field'] is not None:
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value = kwargs['field']
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setattr(self, field, value)
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def __setattr__(self, attr, value):
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if attr == '_data':
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super().__setattr__(attr, value)
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return
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if attr not in self.fields:
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raise TypeError(f'{attr} not an allowed attribute')
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self._data[attr] = value
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def __getattr__(self, attr):
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if attr == '_data':
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return super
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if attr not in self.fields and attr != '_data':
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raise TypeError(f'{attr} not an allowed attribute')
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return self._data.get(attr, None)
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def dict(self):
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return self._data
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def serialize_from_biolomics(ws_data, client=None) -> TaxonomyMirri:
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return ws_data
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medium = GrowthMedium()
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medium.record_name = ws_data.get('RecordName', None)
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medium.record_id = ws_data.get('RecordId', None)
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for key, value in ws_data['RecordDetails'].items():
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value = value['Value']
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if not value:
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continue
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if key == "Full description":
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medium.full_description = value
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if key == "Ingredients":
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medium.ingredients = value
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if key == 'Medium description':
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medium.description = value
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if key == 'Other name':
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medium.other_name= value
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if key == 'pH':
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medium.ph = value
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if key == 'Sterilization conditions':
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medium.sterilization_conditions = value
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return medium
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