mirri_utils/README.md

MIRRI Utils

Installation

pip install path_to_package.tar.gz

Description

A small set of utilities to deal with Mirri Data.

• A data class to deal with strain data.

• An excel reader for mirri specification

• An excel validator for mirri specification

• An excel writer to create the excel with MIRRI specifications

Update 06-09-2022

Under the bin directory: bin
upload_strains_to_mirri_is_NEWDB.py validateNEW.py

those files are created to inserting the data from the excel files into the database mirridb.

validateNEW.py:

the purpose of this file is to be the orchestator for the validations and the calling the upload to mirridb.

upload_strains_to_mirri_is_NEWDB.py: This script is inserting the excel into the database, the code has comments regarding the steps.