Upload
This commit is contained in:
commit
842fe346ad
234
mirri-db.sql
Normal file
234
mirri-db.sql
Normal file
@ -0,0 +1,234 @@
|
|||||||
|
-- MySQL dump 10.13 Distrib 5.5.62, for Win64 (AMD64)
|
||||||
|
--
|
||||||
|
-- Host: mirri-is.mirri.org Database: mirri-db
|
||||||
|
-- ------------------------------------------------------
|
||||||
|
-- Server version 8.0.29
|
||||||
|
|
||||||
|
/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */;
|
||||||
|
/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */;
|
||||||
|
/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */;
|
||||||
|
/*!40101 SET NAMES utf8 */;
|
||||||
|
/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */;
|
||||||
|
/*!40103 SET TIME_ZONE='+00:00' */;
|
||||||
|
/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */;
|
||||||
|
/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */;
|
||||||
|
/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO' */;
|
||||||
|
/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Genomic information`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Genomic information`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Genomic information` (
|
||||||
|
`Strain_AN` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Marker` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`INSDC_AN` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Sequence` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Geographic origin`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Geographic origin`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Geographic origin` (
|
||||||
|
`ID` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Country` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Region` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`City` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Locality` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Growth media`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Growth media`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Growth media` (
|
||||||
|
`Acronym` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Description` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Full_description` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Literature`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Literature`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Literature` (
|
||||||
|
`ID` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Full_reference` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Authors` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Title` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Journal` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Year` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Volume` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Issue` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`First_page` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Last_page` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Book_title` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Editors` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Publisher` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Markers`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Markers`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Markers` (
|
||||||
|
`Acronym` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Marker` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Ontobiotope`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Ontobiotope`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Ontobiotope` (
|
||||||
|
`ID` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Name` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Sexual states`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Sexual states`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Sexual states` (
|
||||||
|
`H+` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `Strains`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `Strains`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `Strains` (
|
||||||
|
`Accession_number` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Restrictions_on_use` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Nagoya_protocol_restrictions_and_compliance_conditions` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`ABS_related_files` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`MTA_file` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Other_culture_collection_numbers` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Strain_from_a_registered_collection` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Risk_Group` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Dual_use` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Quarantine_in_Europe` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Organism_type` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Taxon_name` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Infrasubspecific_names` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Comment_on_taxonomy` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Interspecific_hybrid` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Status` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`History_of_deposit` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Depositor` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Date_of_deposit` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Date_of_inclusion_in_the_catalogue` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Collected_by` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Date_of_collection` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Isolated_by` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Date_of_isolation` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Substrate/host_of_isolation` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Tested_temperature_growth_range` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Recommended_growth_temperature` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Recommended_medium_for_growth` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Form_of_supply` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Other_denomination` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Coordinates_of_geographic_origin` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Altitude_of_geographic_origin` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Geographic_origin` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Isolation_habitat` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Ontobiotope_term_for_the_isolation_habitat` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`GMO` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`GMO_construction_information` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Mutant_information` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Genotype` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Sexual_state` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Ploidy` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Plasmids` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Plasmids_collections_fields` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Literature` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Plant_pathogenicity_code` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Pathogenicity` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Enzyme_production` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Production_of_metabolites` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Applications` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Remarks` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`Literature_linked_to_the_sequence/genome` text COLLATE utf8mb4_unicode_ci,
|
||||||
|
`f_id` bigint DEFAULT NULL
|
||||||
|
) ENGINE=InnoDB DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `culture_collections`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `culture_collections`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `culture_collections` (
|
||||||
|
`cc_id` int NOT NULL AUTO_INCREMENT,
|
||||||
|
`name` varchar(250) COLLATE utf8mb4_unicode_ci NOT NULL,
|
||||||
|
PRIMARY KEY (`cc_id`)
|
||||||
|
) ENGINE=InnoDB AUTO_INCREMENT=2 DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
--
|
||||||
|
-- Table structure for table `file_upload`
|
||||||
|
--
|
||||||
|
|
||||||
|
DROP TABLE IF EXISTS `file_upload`;
|
||||||
|
/*!40101 SET @saved_cs_client = @@character_set_client */;
|
||||||
|
/*!40101 SET character_set_client = utf8 */;
|
||||||
|
CREATE TABLE `file_upload` (
|
||||||
|
`f_id` int NOT NULL AUTO_INCREMENT,
|
||||||
|
`filename` varchar(250) COLLATE utf8mb4_unicode_ci NOT NULL,
|
||||||
|
`created_datetime` timestamp NOT NULL DEFAULT CURRENT_TIMESTAMP,
|
||||||
|
`cc_id` int DEFAULT NULL,
|
||||||
|
PRIMARY KEY (`f_id`),
|
||||||
|
KEY `file_upload_FK` (`cc_id`),
|
||||||
|
CONSTRAINT `file_upload_FK` FOREIGN KEY (`cc_id`) REFERENCES `culture_collections` (`cc_id`)
|
||||||
|
) ENGINE=InnoDB AUTO_INCREMENT=15 DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_unicode_ci;
|
||||||
|
/*!40101 SET character_set_client = @saved_cs_client */;
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW `vw_last_file` AS
|
||||||
|
select
|
||||||
|
`fu`.`cc_id` AS `cc_id`,
|
||||||
|
max(`fu`.`f_id`) AS `file_id`
|
||||||
|
from
|
||||||
|
`file_upload` `fu`
|
||||||
|
group by
|
||||||
|
`fu`.`cc_id`;
|
||||||
75
vw_strains_202206 source.sql
Normal file
75
vw_strains_202206 source.sql
Normal file
@ -0,0 +1,75 @@
|
|||||||
|
-- mirri.vw_strains_202206 source
|
||||||
|
|
||||||
|
CREATE OR REPLACE VIEW `mirri`.`vw_strains_202206` AS
|
||||||
|
with `taxonomy` as (
|
||||||
|
select
|
||||||
|
`zmsmt`.`_id` AS `_id`,
|
||||||
|
`zmsmt`.`x` AS `x`,
|
||||||
|
`zmsmt`.`y` AS `y`,
|
||||||
|
`zmsmt`.`idx` AS `idx`,
|
||||||
|
`zmsmt`.`idy` AS `idy`
|
||||||
|
from
|
||||||
|
`mirri`.`zy_mirri_strains_mirri_taxonomy_737` `zmsmt`)
|
||||||
|
select
|
||||||
|
`s`.`name` AS `MIRRI Accession number`,
|
||||||
|
`s`.`mirri_accession_number` AS `Accession number`,
|
||||||
|
`s`.`restriction_on_use` AS `Restrictions on use`,
|
||||||
|
`s`.`nagoya` AS `Nagoya protocol restrictions and compliance conditions`,
|
||||||
|
`s`.`abs_url` AS `ABS related files`,
|
||||||
|
`s`.`mta_url` AS `MTA url`,
|
||||||
|
`s`.`mta_text` AS `MTA text`,
|
||||||
|
`s`.`strains_from_reg_collection` AS `Strain from a Registered Collection`,
|
||||||
|
`s`.`risk_group` AS `Risk Group`,
|
||||||
|
`s`.`dual_use` AS `Dual use`,
|
||||||
|
`s`.`quarantine_europe` AS `Quarantine in Europe`,
|
||||||
|
trim(leading ';' from concat((case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 2), '¶',-(1)) = '2') then ';Algae' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 3), '¶',-(1)) = '2') then ';Archaea' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 4), '¶',-(1)) = '2') then ';Bacteria' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 5), '¶',-(1)) = '2') then ';Cyanobacteria' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 6), '¶',-(1)) = '2') then ';Filamentous Fungi' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 7), '¶',-(1)) = '2') then ';Phage' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 8), '¶',-(1)) = '2') then ';Plasmid' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 9), '¶',-(1)) = '2') then ';Virus' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 10), '¶',-(1)) = '2') then ';Yeast' else '' end),(case when (substring_index(substring_index(`s`.`type_of_organim`, '¶', 11), '¶',-(1)) = '2') then ';Microalgae' else '' end))) AS `Organism type`,
|
||||||
|
`t`.`name` AS `Taxon name`,
|
||||||
|
`s`.`infra_subsp_name` AS `Infrasubspecific names`,
|
||||||
|
`s`.`comment_taxonomy` AS `Comment on taxonomy`,
|
||||||
|
`s`.`type_description` AS `Type`,
|
||||||
|
`s`.`status` AS `Status`,
|
||||||
|
`s`.`history` AS `History of deposit`,
|
||||||
|
`s`.`depositor` AS `Depositor`,
|
||||||
|
trim(leading '//' from trim(leading '//0' from concat(substr(`s`.`deposited_date`, 7, 2), '/', substr(`s`.`deposited_date`, 5, 2), '/', substr(`s`.`deposited_date`, 1, 4)))) AS `Date of deposit`,
|
||||||
|
`s`.`collector` AS `Collected by`,
|
||||||
|
trim(leading '//' from trim(leading '//0' from concat(substr(`s`.`collection_date`, 7, 2), '/', substr(`s`.`collection_date`, 5, 2), '/', substr(`s`.`collection_date`, 1, 4)))) AS `Date of collection`,
|
||||||
|
`s`.`isolator` AS `Isolated by`,
|
||||||
|
trim(leading '//' from trim(leading '//0' from concat(substr(`s`.`isolation_date`, 7, 2), '/', substr(`s`.`isolation_date`, 5, 2), '/', substr(`s`.`isolation_date`, 1, 4)))) AS `Date of isolation`,
|
||||||
|
trim(leading '//' from trim(leading '//0' from concat(substr(`s`.`catalogue_date`, 7, 2), '/', substr(`s`.`catalogue_date`, 5, 2), '/', substr(`s`.`catalogue_date`, 1, 4)))) AS `Date of inclusion in the catalogue`,
|
||||||
|
`s`.`tested_growth_temp` AS `Tested temperature growth range`,
|
||||||
|
`s`.`growth_temp` AS `Recommended growth temperature`,
|
||||||
|
NULL AS `Recommended medium for growth`,
|
||||||
|
trim(leading ';' from concat((case when (substring_index(substring_index(`s`.`form_supply`, '¶', 2), '¶',-(1)) = '2') then 'Agar' else '' end),(case when (substring_index(substring_index(`s`.`form_supply`, '¶', 3), '¶',-(1)) = '2') then ';Cryo' else '' end),(case when (substring_index(substring_index(`s`.`form_supply`, '¶', 4), '¶',-(1)) = '2') then ';Dry Ice' else '' end),(case when (substring_index(substring_index(`s`.`form_supply`, '¶', 5), '¶',-(1)) = '2') then ';Liquid Culture Medium' else '' end),(case when (substring_index(substring_index(`s`.`form_supply`, '¶', 6), '¶',-(1)) = '2') then ';Lyo' else '' end),(case when (substring_index(substring_index(`s`.`form_supply`, '¶', 7), '¶',-(1)) = '2') then ';Oil' else '' end),(case when (substring_index(substring_index(`s`.`form_supply`, '¶', 8), '¶',-(1)) = '2') then ';Water' else '' end))) AS `Form of supply`,
|
||||||
|
`s`.`other_denomination` AS `Other denomination`,
|
||||||
|
`s`.`coordinates` AS `Coordinates of geographic origin`,
|
||||||
|
`s`.`origin_id` AS `Country`,
|
||||||
|
`s`.`locality_of_origin` AS `Geographic origin`,
|
||||||
|
`s`.`gmo` AS `GMO`,
|
||||||
|
NULL AS `GMO construction information`,
|
||||||
|
`s`.`mutant` AS `Mutant information`,
|
||||||
|
`s`.`genotype` AS `Genotype`,
|
||||||
|
`s`.`literature_doi` AS `Literature`,
|
||||||
|
`s`.`sexual_state` AS `Sexual state`,
|
||||||
|
`s`.`ploidy` AS `Ploidy`,
|
||||||
|
`s`.`interspecific_hybrid` AS `Interspecific hybrid`,
|
||||||
|
`s`.`pathogenicity` AS `Pathogenicity`,
|
||||||
|
`s`.`enzyme_production` AS `Enzyme production`,
|
||||||
|
`s`.`metabolites_production` AS `Production of metabolites`,
|
||||||
|
`s`.`applications` AS `Applications`,
|
||||||
|
`s`.`remarks` AS `Remarks`,
|
||||||
|
`s`.`plasmids` AS `Plasmids`,
|
||||||
|
`s`.`plasmids_collections` AS `Plasmids collections fields`,
|
||||||
|
`s`.`substrate_of_isolation` AS `Substrate/host of isolation`,
|
||||||
|
`s`.`isolation_habitat` AS `Isolation habitat`,
|
||||||
|
`s`.`ontobiotope` AS `Ontobiotope term for the isolation habitat`,
|
||||||
|
NULL AS `Genomic sequences and accession numbers`,
|
||||||
|
NULL AS `Literature linked to the sequence/genome`,
|
||||||
|
NULL AS `Link to other sites`,
|
||||||
|
NULL AS `QPS`,
|
||||||
|
NULL AS `Axenic culture`
|
||||||
|
from
|
||||||
|
((`mirri`.`mirri_strains` `s`
|
||||||
|
left join `taxonomy` `tu` on
|
||||||
|
((`tu`.`x` = `s`.`_id`)))
|
||||||
|
left join `mirri`.`mirri_taxonomy` `t` on
|
||||||
|
((`t`.`_id` = `tu`.`y`)));
|
||||||
Loading…
x
Reference in New Issue
Block a user