18-07

io/parsers/mirri_excel.py

@@ -19,12 +19,6 @@ from mirri.settings import (COMMERCIAL_USE_WITH_AGREEMENT, GENOMIC_INFO,
                             NAGOYA_PROBABLY_SCOPE, NO_RESTRICTION,
                             ONLY_RESEARCH, ONTOBIOTOPE,
                             PUBLICATION_FIELDS, STRAINS, SUBTAXAS)
-from mirri.settings_v1 import (COMMERCIAL_USE_WITH_AGREEMENT, GENOMIC_INFO,
-                            GROWTH_MEDIA, LITERATURE_SHEET, LOCATIONS,
-                            MIRRI_FIELDS, NAGOYA_DOCS_AVAILABLE, NAGOYA_NO_RESTRICTIONS,
-                            NAGOYA_PROBABLY_SCOPE, NO_RESTRICTION,
-                            ONLY_RESEARCH, ONTOBIOTOPE,
-                            PUBLICATION_FIELDS, STRAINS, SUBTAXAS)
 from mirri.utils import get_country_from_name
 
 RESTRICTION_USE_TRANSLATOR = {
@@ -44,34 +38,12 @@ TRUEFALSE_TRANSLATOR = {
 
 
 def parse_mirri_excel(fhand, version=""):
-    if version == "20200602":
-        return _parse_mirri_v20200601(fhand)
-    elif version == "12052023":
+    if version == "5.1.2":
         return _parse_mirri_v12052023(fhand)            
     else:
-        raise NotImplementedError("Only versions 20200601 and 12052023 are implemented")
+        raise NotImplementedError("Only version is 5.1.2 implemented")
 
 
-def _parse_mirri_v20200601(fhand):
-    fhand.seek(0)
-    file_content = BytesIO(fhand.read())
-    wb = load_workbook(filename=file_content, read_only=True, data_only=True)
-
-    locations = workbook_sheet_reader(wb, LOCATIONS)
-    ontobiotopes = workbook_sheet_reader(wb, ONTOBIOTOPE)
-
-    growth_media = list(parse_growth_media(wb))
-
-    markers = workbook_sheet_reader(wb, GENOMIC_INFO)
-
-    publications = list(parse_publications(wb))
-
-    strains = parse_strains(wb, locations=locations,  growth_media=growth_media,
-                            markers=markers, publications=publications,
-                            ontobiotopes=ontobiotopes)
-
-    return {"strains": strains, "growth_media": growth_media}
-
 def _parse_mirri_v12052023(fhand):
     fhand.seek(0)
     file_content = BytesIO(fhand.read())